Publications 2016

Publications in which OIC equipment was used

  1. Alves, M. M., Halim, D., Maroofian, R., de Graaf, B. M., Rooman, R., van der Werf, C. S., . . . Hofstra, R. M. (2016). Genetic screening of Congenital Short Bowel Syndrome patients confirms CLMP as the major gene involved in the recessive form of this disorder. Eur J Hum Genet, 24 (11), 1627-1629. doi: 10.1038/ejhg.2016.58 
  2. Bazzigaluppi, P., & de Jeu, M. T. (2016). Heterogeneous Expression of T-type Ca(2+) Channels Defines Different Neuronal Populations in the Inferior Olive of the Mouse. Front Cell Neurosci, 10, 192. doi: 10.3389/fncel.2016.00192 
  3. Bolkestein, M., de Blois, E., Koelewijn, S. J., Eggermont, A. M., Grosveld, F., de Jong, M., & Koning, G. A. (2016). Investigation of Factors Determining the Enhanced Permeability and Retention Effect in Subcutaneous Xenografts. J Nucl Med, 57 (4), 601-607. doi: 10.2967/jnumed.115.166173 
  4. Broek, J. A., Lin, Z., de Gruiter, H. M., van ‘t Spijker, H., Haasdijk, E. D., Cox, D., . . . Bahn, S. (2016). Synaptic vesicle dynamic changes in a model of fragile X. Mol Autism, 7, 17. doi: 10.1186/s13229-016-0080-1 
  5. Buijsen, R. A., Visser, J. A., Kramer, P., Severijnen, E. A., Gearing, M., Charlet-Berguerand, N., . . . Hukema, R. K. (2016). Presence of inclusions positive for polyglycine containing protein, FMRpolyG, indicates that repeat-associated non-AUG translation plays a role in fragile X-associated primary ovarian insufficiency. Hum Reprod, 31 (1), 158-168. doi: 10.1093/humrep/dev280 
  6. Buxa, M. K., Slotman, J. A., van Royen, M. E., Paul, M. W., Houtsmuller, A. B., & Renkawitz, R. (2016). Insulator speckles associated with long-distance chromatin contacts. Biol Open, 5 (9), 1266-1274. doi: 10.1242/bio.019455 
  7. Chatalic, K. L., Konijnenberg, M., Nonnekens, J., de Blois, E., Hoeben, S., de Ridder, C., . . . de Jong, M. (2016). In Vivo Stabilization of a Gastrin-Releasing Peptide Receptor Antagonist Enhances PET Imaging and Radionuclide Therapy of Prostate Cancer in Preclinical Studies. Theranostics, 6 (1), 104-117. doi: 10.7150/thno.13580 
  8. Cranfill, P. J., Sell, B. R., Baird, M. A., Allen, J. R., Lavagnino, Z., de Gruiter, H. M., . . . Piston, D. W. (2016). Quantitative assessment of fluorescent proteins. Nat Methods, 13 (7), 557-562. doi: 10.1038/nmeth.3891 
  9. Crisan, M., Solaimani Kartalaei, P., Neagu, A., Karkanpouna, S., Yamada-Inagawa, T., Purini, C., . . . Dzierzak, E. (2016). BMP and Hedgehog Regulate Distinct AGM Hematopoietic Stem Cells Ex Vivo. Stem Cell Reports, 6 (3), 383-395. doi: 10.1016/j.stemcr.2016.01.016 
  10. Dalm, S. U., Nonnekens, J., Doeswijk, G. N., de Blois, E., van Gent, D. C., Konijnenberg, M. W., & de Jong, M. (2016). Comparison of the Therapeutic Response to Treatment with a 177Lu-Labeled Somatostatin Receptor Agonist and Antagonist in Preclinical Models. J Nucl Med, 57 (2), 260-265. doi: 10.2967/jnumed.115.167007 
  11. Das, A. M., Koljenovic, S., Oude Ophuis, C. M., van der Klok, T., Galjart, B., Nigg, A. L., . . . ten Hagen, T. L. (2016). Association of TIMP3 expression with vessel density, macrophage infiltration and prognosis in human malignant melanoma. Eur J Cancer, 53, 135-143. doi: 10.1016/j.ejca.2015.09.014 
  12. de Bruijn, H. S., Brooks, S., van der Ploeg-van den Heuvel, A., Ten Hagen, T. L., de Haas, E. R., & Robinson, D. J. (2016). Light Fractionation Significantly Increases the Efficacy of Photodynamic Therapy Using BF-200 ALA in Normal Mouse Skin. PLoS One, 11 (2), e0148850. doi: 10.1371/journal.pone.0148850 
  13. Dicheva, B. M., Seynhaeve, A. L., Soulie, T., Eggermont, A. M., Ten Hagen, T. L., & Koning, G. A. (2016). Pharmacokinetics, Tissue Distribution and Therapeutic Effect of Cationic Thermosensitive Liposomal Doxorubicin Upon Mild Hyperthermia. Pharm Res, 33 (3), 627-638. doi: 10.1007/s11095-015-1815-y 
  14. Dupont, C., Maduro, C., Den Braanker, H., Boers, R., Kurek, D., & Gribnau, J. (2016). Characterization of Histone Modifications Associated with Inactive X-Chromosome in Trophoblast Stem Cells, eXtra-Embryonic Endoderm Cells and in In Vitro Derived Undifferentiated and Differentiated Epiblast Like Stem Cells. PLoS One, 11 (12), e0167154. doi: 10.1371/journal.pone.0167154 
  15. Federici, F., Magaraki, A., Wassenaar, E., van Veen-Buurman, C. J., van de Werken, C., Baart, E. B., . . . Baarends, W. M. (2016). Round Spermatid Injection Rescues Female Lethality of a Paternally Inherited Xist Deletion in Mouse. PLoS Genet, 12 (10), e1006358. doi: 10.1371/journal.pgen.1006358 
  16. Gao, Z., Proietti-Onori, M., Lin, Z., Ten Brinke, M. M., Boele, H. J., Potters, J. W., . . . De Zeeuw, C. I. (2016). Excitatory Cerebellar Nucleocortical Circuit Provides Internal Amplification during Associative Conditioning. Neuron, 89 (3), 645-657. doi: 10.1016/j.neuron.2016.01.008 
  17. Haeri, A., Zalba, S., Ten Hagen, T. L., Dadashzadeh, S., & Koning, G. A. (2016). EGFR targeted thermosensitive liposomes: A novel multifunctional platform for simultaneous tumor targeted and stimulus responsive drug delivery. Colloids Surf B Biointerfaces, 146, 657-669. doi: 10.1016/j.colsurfb.2016.06.012 
  18. Hansenova Manaskova, S., Bikker, F. J., Nazmi, K., van Zuidam, R., Slotman, J. A., van Cappellen, W. A., . . . Kaman, W. E. (2016). Incorporation of a Valine-Leucine-Lysine-Containing Substrate in the Bacterial Cell Wall. Bioconjug Chem, 27 (10), 2418-2423. doi: 10.1021/acs.bioconjchem.6b00381 
  19. Kaimakis, P., de Pater, E., Eich, C., Solaimani Kartalaei, P., Kauts, M. L., Vink, C. S., . . . Dzierzak, E. (2016). Functional and molecular characterization of mouse Gata2-independent hematopoietic progenitors. Blood, 127 (11), 1426-1437. doi: 10.1182/blood-2015-10-673749 
  20. Kauts, M. L., Vink, C. S., & Dzierzak, E. (2016). Hematopoietic (stem) cell development – how divergent are the roads taken? FEBS Lett, 590 (22), 3975-3986. doi: 10.1002/1873-3468.12372 
  21. Kolijn, K., & van Leenders, G. J. (2016). Comparison of RNA extraction kits and histological stains for laser capture microdissected prostate tissue. BMC Res Notes, 9, 17. doi: 10.1186/s13104-015-1813-5 
  22. Kruiswijk, F., Hasenfuss, S. C., Sivapatham, R., Baar, M. P., Putavet, D., Naipal, K. A., . . . de Keizer, P. L. (2016). Targeted inhibition of metastatic melanoma through interference with Pin1-FOXM1 signaling. Oncogene, 35 (17), 2166-2177. doi: 10.1038/onc.2015.282 
  23. Lokerse, W. J., Bolkestein, M., Ten Hagen, T. L., de Jong, M., Eggermont, A. M., Grull, H., & Koning, G. A. (2016). Investigation of Particle Accumulation, Chemosensitivity and Thermosensitivity for Effective Solid Tumor Therapy Using Thermosensitive Liposomes and Hyperthermia. Theranostics, 6 (10), 1717-1731. doi: 10.7150/thno.14960 
  24. Lokerse, W. J., Kneepkens, E. C., ten Hagen, T. L., Eggermont, A. M., Grull, H., & Koning, G. A. (2016). In depth study on thermosensitive liposomes: Optimizing formulations for tumor specific therapy and in vitro to in vivo relations. Biomaterials, 82, 138-150. doi: 10.1016/j.biomaterials.2015.12.023 
  25. Loos, F., Maduro, C., Loda, A., Lehmann, J., Kremers, G. J., Ten Berge, D., . . . Gribnau, J. (2016). Xist and Tsix Transcription Dynamics Is Regulated by the X-to-Autosome Ratio and Semistable Transcriptional States. Mol Cell Biol, 36 (21), 2656-2667. doi: 10.1128/MCB.00183-16 
  26. Maria, N. I., Steenwijk, E. C., AS, I. Jpma, van Helden-Meeuwsen, C. G., Vogelsang, P., Beumer, W., . . . Versnel, M. A. (2016). Contrasting expression pattern of RNA-sensing receptors TLR7, RIG-I and MDA5 in interferon-positive and interferon-negative patients with primary Sjogren’s syndrome. Ann Rheum Dis. doi: 10.1136/annrheumdis-2016-209589 
  27. Maria, N. I., van Helden-Meeuwsen, C. G., Brkic, Z., Paulissen, S. M., Steenwijk, E. C., Dalm, V. A., . . . Versnel, M. A. (2016). Association of Increased Treg Cell Levels With Elevated Indoleamine 2,3-Dioxygenase Activity and an Imbalanced Kynurenine Pathway in Interferon-Positive Primary Sjogren’s Syndrome. Arthritis Rheumatol, 68 (7), 1688-1699. doi: 10.1002/art.39629 
  28. Meddens, M. B., Pandzic, E., Slotman, J. A., Guillet, D., Joosten, B., Mennens, S., . . . Cambi, A. (2016). Actomyosin-dependent dynamic spatial patterns of cytoskeletal components drive mesoscale podosome organization. Nat Commun, 7, 13127. doi: 10.1038/ncomms13127 
  29. Naipal, Kishan, Verkaik, Nicole, Sanchez, Humberto, van Deurzen, Carolien, den Bakker, Michael, Hoeijmakers, Jan, . . . van Gent, Dik. (2016). Tumor slice culture system to assess drug response of primary breast cancer. B M C Cancer, 16 (1). doi: 10.1186/s12885-016-2119-2 
  30. Nonnekens, J., van Kranenburg, M., Beerens, C. E., Suker, M., Doukas, M., van Eijck, C. H., . . . van Gent, D. C. (2016). Potentiation of Peptide Receptor Radionuclide Therapy by the PARP Inhibitor Olaparib. Theranostics, 6 (11), 1821-1832. doi: 10.7150/thno.15311 
  31. Oosterhof, N., Holtman, I. R., Kuil, L. E., van der Linde, H. C., Boddeke, E. W., Eggen, B. J., & van Ham, T. J. (2017). Identification of a conserved and acute neurodegeneration-specific microglial transcriptome in the zebrafish. Glia, 65 (1), 138-149. doi: 10.1002/glia.23083 
  32. Pandya, N. J., Klaassen, R. V., van der Schors, R. C., Slotman, J. A., Houtsmuller, A., Smit, A. B., & Li, K. W. (2016). Group 1 metabotropic glutamate receptors 1 and 5 form a protein complex in mouse hippocampus and cortex. Proteomics, 16 (20), 2698-2705. doi: 10.1002/pmic.201500400 
  33. Panzer, L., Trube, L., Klose, M., Joosten, B., Slotman, J., Cambi, A., & Linder, S. (2016). The formins FHOD1 and INF2 regulate inter- and intra-structural contractility of podosomes. J Cell Sci, 129 (2), 298-313. doi: 10.1242/jcs.177691 
  34. Prekovic, S., van Royen, M. E., Voet, A. R., Geverts, B., Houtman, R., Melchers, D., . . . Helsen, C. (2016). The Effect of F877L and T878A Mutations on Androgen Receptor Response to Enzalutamide. Mol Cancer Ther, 15 (7), 1702-1712. doi: 10.1158/1535-7163.MCT-15-0892 
  35. Rahmati, N., Vinueza Veloz, M. F., Xu, J., Barone, S., Rodolfo Ben Hamida, N., Schonewille, M., . . . De Zeeuw, C. I. (2016). SLC26A11 (KBAT) in Purkinje Cells Is Critical for Inhibitory Transmission and Contributes to Locomotor Coordination. eNeuro, 3 (3). doi: 10.1523/ENEURO.0028-16.2016 
  36. Rother, M. B., Jensen, K., van der Burg, M., van de Bovenkamp, F. S., Kroek, R., van, IJcken W. F., . . . van Zelm, M. C. (2016). Decreased IL7Ralpha and TdT expression underlie the skewed immunoglobulin repertoire of human B-cell precursors from fetal origin. Sci Rep, 6, 33924. doi: 10.1038/srep33924 
  37. Ruela-de-Sousa, R. R., Hoekstra, E., Hoogland, A. M., Queiroz, K. C., Peppelenbosch, M. P., Stubbs, A. P., . . . Fuhler, G. M. (2016). Low-Molecular-Weight Protein Tyrosine Phosphatase Predicts Prostate Cancer Outcome by Increasing the Metastatic Potential. Eur Urol, 69 (4), 710-719. doi: 10.1016/j.eururo.2015.06.040 
  38. Saeed, M., van Brakel, M., Zalba, S., Schooten, E., Rens, J. A., Koning, G. A., . . . Ten Hagen, T. L. (2016). Targeting melanoma with immunoliposomes coupled to anti-MAGE A1 TCR-like single-chain antibody. Int J Nanomedicine, 11, 955-975. doi: 10.2147/IJN.S96123 
  39. Schewe, M., Franken, P. F., Sacchetti, A., Schmitt, M., Joosten, R., Bottcher, R., . . . Fodde, R. (2016). Secreted Phospholipases A2 Are Intestinal Stem Cell Niche Factors with Distinct Roles in Homeostasis, Inflammation, and Cancer. Cell Stem Cell, 19 (1), 38-51. doi: 10.1016/j.stem.2016.05.023 
  40. Sepe, S., Milanese, C., Gabriels, S., Derks, K. W., Payan-Gomez, C., van, IJcken W. F., . . . Mastroberardino, P. G. (2016). Inefficient DNA Repair Is an Aging-Related Modifier of Parkinson’s Disease. Cell Rep, 15 (9), 1866-1875. doi: 10.1016/j.celrep.2016.04.071 
  41. Seynhaeve, A. L., & Ten Hagen, T. L. (2016). High-Resolution Intravital Microscopy of Tumor Angiogenesis. Methods Mol Biol, 1464, 115-127. doi: 10.1007/978-1-4939-3999-2_11 
  42. van Royen, M. E., Verhoef, E. I., Kweldam, C. F., van Cappellen, W. A., Kremers, G. J., Houtsmuller, A. B., & van Leenders, G. J. (2016). Three-dimensional microscopic analysis of clinical prostate specimens. Histopathology, 69 (6), 985-992. doi: 10.1111/his.13022 
  43. Verhoef, E. I., Kolijn, K., De Herdt, M. J., van der Steen, B., Hoogland, A. M., Sleddens, H. F., . . . van Leenders, G. J. (2016). MET expression during prostate cancer progression. Oncotarget, 7 (21), 31029-31036. doi: 10.18632/oncotarget.8829 
  44. Vermeij, W. P., Dolle, M. E., Reiling, E., Jaarsma, D., Payan-Gomez, C., Bombardieri, C. R., . . . Hoeijmakers, J. H. (2016). Restricted diet delays accelerated ageing and genomic stress in DNA-repair-deficient mice. Nature, 537 (7620), 427-431. doi: 10.1038/nature19329 
  45. Vroman, H., Bergen, I. M., Li, B. W., van Hulst, J. A., Lukkes, M., van Uden, D., . . . Kool, M. (2016). Development of eosinophilic inflammation is independent of B-T cell interaction in a chronic house dust mite-driven asthma model. Clin Exp Allergy. doi: 10.1111/cea.12834 
  46. Wang, W., Xu, L., Brandsma, J. H., Wang, Y., Hakim, M. S., Zhou, X., . . . Pan, Q. (2016). Convergent Transcription of Interferon-stimulated Genes by TNF-alpha and IFN-alpha Augments Antiviral Activity against HCV and HEV. Sci Rep, 6, 25482. doi: 10.1038/srep25482 
  47. Wang, Y., Wang, W., Xu, L., Zhou, X., Shokrollahi, E., Felczak, K., . . . Pan, Q. (2016). Cross Talk between Nucleotide Synthesis Pathways with Cellular Immunity in Constraining Hepatitis E Virus Replication. Antimicrob Agents Chemother, 60 (5), 2834-2848. doi: 10.1128/AAC.02700-15 
  48. Xu, L., Zhou, X., Wang, W., Wang, Y., Yin, Y., Laan, L. J., . . . Pan, Q. (2016). IFN regulatory factor 1 restricts hepatitis E virus replication by activating STAT1 to induce antiviral IFN-stimulated genes. FASEB J, 30 (10), 3352-3367. doi: 10.1096/fj.201600356R 
  49. Yin, Y., Wang, Y., Dang, W., Xu, L., Su, J., Zhou, X., . . . Pan, Q. (2016). Mycophenolic acid potently inhibits rotavirus infection with a high barrier to resistance development. Antiviral Res, 133, 41-49. doi: 10.1016/j.antiviral.2016.07.017 
  50. Yu, N., Signorile, L., Basu, S., Ottema, S., Lebbink, J. H., Leslie, K., . . . Galjart, N. (2016). Isolation of Functional Tubulin Dimers and of Tubulin-Associated Proteins from Mammalian Cells. Curr Biol, 26 (13), 1728-1736. doi: 10.1016/j.cub.2016.04.069 
  51. Zambetti, N. A., Ping, Z., Chen, S., Kenswil, K. J., Mylona, M. A., Sanders, M. A., . . . Raaijmakers, M. H. (2016). Mesenchymal Inflammation Drives Genotoxic Stress in Hematopoietic Stem Cells and Predicts Disease Evolution in Human Pre-leukemia. Cell Stem Cell, 19 (5), 613-627. doi: 10.1016/j.stem.2016.08.021 
  52. Zhou, X., Xu, L., Wang, W., Watashi, K., Wang, Y., Sprengers, D., . . . Pan, Q. (2016). Disparity of basal and therapeutically activated interferon signalling in constraining hepatitis E virus infection. J Viral Hepat, 23 (4), 294-304. doi: 10.1111/jvh.12491