Publications 2017

Publications in which OIC equipment was used

  1. Baar, M., R. Brandt, D. Putavet, J. D. D. Klein, K. Derks, B. R. M. Bourgeois, S. Stryeck, Y. Rijksen, H. van Willigenburg, D. A. Feijtel, I. van der Pluijm, J. Essers, G. van Cappellen, W. van IJcken, A. Houtsmuller, J. Pothof, R. de Bruin, T. Madl, J. H. J. Hoeijmakers, J. Campisi and P. de Keizer (2017). “Targeted Apoptosis of Senescent Cells Restores Tissue Homeostasis in Response to Chemotoxicity and Aging.” Cell 169 (1): 132-147.e116. 
  2. Bijnsdorp, I. V., M. E. van Royen, G. W. Verhaegh and E. S. Martens-Uzunova (2017). “The Non-Coding Transcriptome of Prostate Cancer: Implications for Clinical Practice.” Mol Diagn Ther 21 (4): 385-400. 
  3. Cao, W., K. Chen, M. Bolkestein, Y. Yin, M. Verstegen, M. Bijvelds, W. Wang, N. Tüysüz, D. ten Berge, D. Sprengers, H. Metselaar, L. van der Laan, J. Kwekkeboom, R. Smits, M. Peppelenbosch and Q. Pan (2017). “Dynamics of Proliferative and Quiescent Stem Cells in Liver Homeostasis and Injury.” Gastroenterology 153 (4): 1133-1147. 
  4. de Hoogt, R., M. F. Estrada, S. Vidic, E. J. Davies, A. Osswald, M. Barbier, V. E. Santo, K. Gjerde, H. J. A. A. Van Zoggel, S. Blom, M. Dong, K. Närhi, E. Boghaert, C. Brito, Y. Chong, W. Sommergruber, H. Van Der Kuip, W. van Weerden, E. W. Verschuren, J. A. Hickman and R. Graeser (2017). “Data descriptor: Protocols and characterization data for 2d, 3d, and slice-based tumor models from the predect project.” Scientific Data 4. 
  5. Eich, C., J. Arlt, C. S. Vink, P. Solaimani Kartalaei, P. Kaimakis, S. A. Mariani, R. van der Linden, W. A. van Cappellen and E. Dzierzak (2017). “In vivo single cell analysis reveals Gata2 dynamics in cells transitioning to hematopoietic fate.” J Exp Med. 
  6. Gonçalves, F. D. C., F. Luk, S. Korevaar, R. Bouzid, A. H. Paz, C. López-Iglesias, C. Baan, A. Merino and M. Hoogduijn (2017). “Membrane particles generated from mesenchymal stromal cells modulate immune responses by selective targeting of pro-inflammatory monocytes.” Scientific Reports 7 (1). 
  7. Gunhanlar, N., G. Shpak, M. Van Der Kroeg, L. A. Gouty-Colomer, S. T. Munshi, B. Lendemeijer, M. Ghazvini, C. Dupont, W. Hoogendijk, J. Gribnau, F. Vrij and S. Kushner (2017). “A simplified protocol for differentiation of electrophysiologically mature neuronal networks from human induced pluripotent stem cells.” Molecular Psychiatry. 
  8. Herzog, E. M., A. J. Eggink, A. Reijnierse, M. A. Kerkhof, R. R. de Krijger, A. J. Roks, I. K. Reiss, A. L. Nigg, P. H. Eilers, E. A. Steegers and R. P. Steegers-Theunissen (2017). “Impact of early- and late-onset preeclampsia on features of placental and newborn vascular health.” Placenta 49: 72-79. 
  9. Higuera, G. A., G. Iaffaldano, M. Bedar, G. Shpak, R. Broersen, S. T. Munshi, C. Dupont, J. Gribnau, F. Vrij, S. Kushner and C. de Zeeuw (2017). “An expandable embryonic stem cell-derived Purkinje neuron progenitor population that exhibits in vivo maturation in the adult mouse cerebellum.” Scientific Reports 7 (1). 
  10. Hoppenbrouwers, T., A. Autar, A. Sultan, T. E. Abraham, G. van Cappellen, A. Houtsmuller, W. van Wamel, H. van Beusekom, H. van Neck and M. de Maat (2017). “In vitro induction of NETosis: Comprehensive live imaging comparison and systematic review.” PLoS ONE 12 (5). 
  11. Küry, S., G. van Woerden, T. Besnard, M. Proietti Onori, X. Latypova, M. C. Towne, M. T. Cho, T. Prescott, M. A. Ploeg, S. Sanders, H. A. F. Stessman, A. Pujol, B. Distel, L. A. Robak, J. A. Bernstein, A.-S. Denommé-Pichon, G. Lesca, E. A. Sellars, J. Berg, W. Carré, Ø. Busk, B. van Bon, J. L. Waugh,M. Deardorff, G.E. Hoganson,K. B. Bosanko,D. S. Johnson, T.Dabir, Ø.Holla, A. Sarkar, K.Tveten,J. de Bellescize, G. J. Braathen, P.Terhal,D.K. Grange,A. vanHaeringen, C. Lam, G. Mirzaa, J. Burton, E. J. Bhoj, J. Douglas, A. B. Santani, A. I. Nesbitt,K. L. Helbig, M. V. Andrews, A. Begtrup, S. Tang,K. L. I. vanGassen, J. Juusola, K. Foss,G. Enns, U.Moog, K.Hinderhofer,N. Paramasivam,S. Lincoln, B. H.Kusako,P.Lindenbaum, E.Charpentier, C.B. Nowak, E. Cherot, T. Simonet, C. Ruivenkamp, S. Hahn, C. A. Brownstein, F.Xia, S. Schmitt, W.Deb,D.Bonneau,M. Nizon,D. Quinquis, J. Chelly, G. Rudolf, D.Sanlaville, P. Parent,B. Gilbert-Dussardier, A. Toutain, V. R. Sutton, J. Thies,L. E.L. M. Peart-Vissers, P.Boisseau, M. Vincent, A. M. Grabrucker, C.Dubourg,W.-H. Tan, N. Verbeek, M.Granzow,G.Santen, J. Shendure, B. Isidor,L. Pasquier, R.Redon, Y. Yang, M. State, T.Kleefstra, B. Cogné, S. Petrovski,K. Retterer,E.Eichler, J. Rosenfeld, P. B. Agrawal, S. Bézieau, S. Odent, Y.Elgersma and S. Mercier (2017). “De NovoMutations in ProteinKinase GenesCAMK2A andCAMK2B Cause Intellectual Disability.”American Journal of Human Genetics101 (5): 768-788.
  12. Lajoinie, G.,T. vanRooij, I.Skachkov,E. Blazejewski, G. Veldhuis, N. de Jong,K. Kooiman and M. Versluis (2017). “Laser-ActivatedPolymericMicrocapsules for Ultrasound Imaging andTherapy: InVitro Feasibility.” Biophysical Journal 112 (9): 1894-1907.
  13. Lokerse, W. J. M.,M. Bolkestein, S. Dalm, A. Eggermont, M. De Jong, H. Grüll and G. Koning(2017).”Comparingthe therapeutic potential of thermosensitive liposomesandhyperthermia intwo distinct subtypesof breast cancer.” Journal of ControlledRelease 258: 34-42.
  14. Magaraki, A., G.van der Heijden, E. Sleddens-Linkels, L. Magarakis, G.van Cappellen, A. H. F. M. Peters, J. Gribnau,W. Baarends and M.Eijpe (2017).”Silencing markersare retained onpericentric heterochromatin during murine primordial germ cell development.” Epigenetics& Chromatin 10 (1).
  15. Mandemaker, I., L. van Cuijk, R. C. Janssens, H.Lans, K. Bezstarosti, J. Hoeijmakers, J.Demmers,W. Vermeulen and J. Marteijn(2017). “DNA damage-induced histone H1ubiquitylation is mediatedby HUWE1 and stimulatesthe RNF8-RNF168 pathway.” ScientificReports 7 (1).
  16. Nadal, M., S.Prekovic, N. Gallastegui, C. Helsen,M. Abella, K. Zielinska,M. Gay,M. Vilaseca, M. Taulès, A. Houtsmuller,M. Royen, F. Claessens,P. Fuentes-Priorand E. Estébanez-Perpiñá (2017). “Structureof the homodimeric androgen receptor ligand-binding domain.” NatureCommunications 8.
  17. Nonnekens, J., K. Chatalic, J. D. M. Molkenboer-Kuenen, C. Beerens, F. Bruchertseifer, A.Morgenstern, J. Veldhoven-Zweistra, M. Schottelius, H.-J. Wester, D. van Gent,W. vanWeerden, O. Boerman,M.De Jong and S. Heskamp(2017).”213Bi-Labeled Prostate-SpecificMembrane Antigen-Targeting Agents InduceDNA Double-Strand Breaks in Prostate CancerXenografts.” Cancer Biotherapy and Radiopharmaceuticals 32 (2):67-73.
  18. Oosterhof, N., I. Holtman, L. Kuil, H. van der Linde, E. Boddeke, B. Eggen and T.van Ham(2017).”Identification of a conservedand acuteneurodegeneration-specific microglial transcriptome in the zebrafish.” Glia 65 (1): 138-149.
  19. Pandya, N. J., F. Koopmans, J. A. Slotman, I. Paliukhovich, A. B. Houtsmuller, A. B. Smit andK. W. Li (2017). “Correlation profiling of brain sub-cellular proteomes reveals co-assembly ofsynaptic proteins and subcellular distribution.” Sci Rep 7 (1):12107.
  20. Sanchez, H., M. Paul, M. Grosbart, S. van Rossum-Fikkert, J. Lebbink, R. Kanaar, A. Houtsmuller and C. Wyman (2017). “Architectural plasticity of human BRCA2-RAD51 complexes in DNA break repair.” Nucleic Acids Research 45 (8): 4507-4518. 
  21. Sanchez, H., M. W. Paul, M. Grosbart, S. E. van Rossum-Fikkert, J. H. G. Lebbink, R. Kanaar, A. B. Houtsmuller and C. Wyman (2017). “Architectural plasticity of human BRCA2-RAD51 complexes in DNA break repair.” Nucleic Acids Res 45 (8): 4507-4518. 
  22. Sandker, M., L. F. Duque, E. Redout, A. Chan, I. Que, C. Löwik, E. Klijnstra, N. Kops, R. Steendam, R. van Weeren, W. E. Hennink and H. Weinans (2017). “Degradation, intra-articular retention and biocompatibility of monospheres composed of [PDLLA-PEG-PDLLA]-b-PLLA multi-block copolymers.” Acta Biomaterialia 48: 401-414. 
  23. Schreiber, J., L.-A. Grimbergen, I. Overwater, T. van der Vaart, J. Stedehouder, A. J. Schuhmacher, C. Guerra, S. Kushner, D. Jaarsma and Y. Elgersma (2017). “Mechanisms underlying cognitive deficits in a mouse model for Costello Syndrome are distinct from other RASopathy mouse models.” Scientific Reports 7 (1). 
  24. Seynhaeve, A. and T. ten Hagen (2017). “Using in Vitro live-cell imaging to explore chemotherapeutics delivered by lipid-based nanoparticles.” Journal of Visualized Experiments 2017 (129). 
  25. Sierksma, M. C. and J. Borst (2017). “Resistance to action potential depression of a rat axon terminal in vivo.” Proceedings of the National Academy of Sciences of the United States of America 114 (16): 4249-4254. 
  26. Slotman, A., J. M. Cramm and A. P. Nieboer (2017). “Validation of the Aging Perceptions Questionnaire Short on a sample of community-dwelling Turkish elderly migrants.” Health Qual Life Outcomes 15 (1): 42. 
  27. Stedehouder, J., J. J. Couey, D. Brizee, B. Hosseini, J. A. Slotman, C. Dirven, G. Shpak, A. Houtsmuller and S. Kushner (2017). “Fast-spiking Parvalbumin Interneurons are Frequently Myelinated in the Cerebral Cortex of Mice and Humans.” Cerebral Cortex 27 (10): 5001-5013. 
  28. Tschurtschenthaler, M., T. E. Adolph, J. W. Ashcroft, L. Niederreiter, R. Bharti, S. Saveljeva, J. Bhattacharyya, M. B. Flak, D. Q. Shih, G. Fuhler, M. Parkes, K. Kohno, T. Iwawaki, J. van der Woude, H. P. Harding, A. M. Smith, M. Peppelenbosch, S. R. Targan, D. Ron, I. von Rosenstiel, R. S. Blumberg and A. Kaser (2017). “Defective ATG16L1-mediated removal of IRE1α drives Crohn’s disease-like ileitis.” The Journal of Experimental Medicine 214 (2): 401-422. 
  29. Tüysüz, N., L. Van Bloois, S. Van Den Brink, H. Begthel, M. Verstegen, L. J. Cruz, L. Hui, L. van der Laan, J. de Jonge, R. Vries, E. Braakman, E. Mastrobattista, J. Cornelissen, H. Clevers and D. ten Berge (2017). “Lipid-mediated Wnt protein stabilization enables serum-free culture of human organ stem cells.” Nature Communications 8. 
  30. van den Bosch, T. P. P., L. Hilbrands, R. Kraaijeveld, N. Litjens, F. Rezaee, D. Nieboer, E. Steyerberg, J. Kal-Van Gestel, D. Roelen, M. Clahsen-van Groningen, C. Baan and A. Rowshani (2017). “Pretransplant Numbers of CD16+ Monocytes as a Novel Biomarker to Predict Acute Rejection After Kidney Transplantation.” American Journal of Transplantation. 
  31. van den Tempel, N., C. Laffeber, H. Odijk, W. A. van Cappellen, G. C. van Rhoon, M. Franckena and R. Kanaar (2017). “The effect of thermal dose on hyperthermia-mediated inhibition of DNA repair through homologous recombination.” Oncotarget 8 (27): 44593-44604. 
  32. van Rooij, T., I. Beekers, K. Lattwein, T. van der Steen, N. de Jong and K. Kooiman (2017). “Vibrational Responses of Bound and Nonbound Targeted Lipid-Coated Single Microbubbles.” I E E E Transactions on Ultrasonics, Ferroelectrics and Frequency Control 64 (5): 785-797. 
  33. Verstegen, M. M. A., J. Willemse, S. van den Hoek, G. J. Kremers, T. M. Luider, N. A. van Huizen, F. Willemssen, H. J. Metselaar, I. J. JNM, L. J. W. van der Laan and J. de Jonge (2017). “Decellularization of Whole Human Liver Grafts Using Controlled Perfusion for Transplantable Organ Bioscaffolds.” Stem Cells Dev 26 (18): 1304-1315. 
  34. Vroman, H., I. Bergen, B. W. Li, J. A. C. Hulst, M. Lukkes, D. van Uden, R. Hendriks and M. Kool (2017). “Development of eosinophilic inflammation is independent of B–T cell interaction in a chronic house dust mite-driven asthma model.” Clinical and Experimental Allergy 47 (4): 551-564. 
  35. Wang, W., Y. Wang, Y. Debing, X. Zhou, Y. Yin, L. Xu, E. Herrera Carrillo, J. Brandsma, R. Poot, B. Berkhout, J. Neyts, M. Peppelenbosch and Q. Pan (2017). “Biological or pharmacological activation of protein kinase C alpha constrains hepatitis E virus replication.” Antiviral Research 140: 1-12. 
  36. Wienholz, F., W. Vermeulen and J. Marteijn (2017). “Amplification of unscheduled DNA synthesis signal enables fluorescence-based single cell quantification of transcription-coupled nucleotide excision repair.” Nucleic Acids Research 45 (9). 
  37. Yin, Y., W. Dang, X. Zhou, L. Xu, W. Wang, W. Cao, S. Chen, J. Su, X. Cai, S. Xiao, M. Peppelenbosch and Q. Pan (2017). “PI3K-Akt-mTOR axis sustains rotavirus infection via the 4E-BP1 mediated autophagy pathway and represents an antiviral target.” Virulence: 1-16. 
  38. Zhou, X., F. Huang, L. Xu, Z. Lin, F. Vrij, A. C. Ayo-Martin, M. Van Der Kroeg, M. Zhao, Y. Yin, W. Wang, W. Cao, Y. Wang, S. Kushner, J. M. Peron, L. Alric, R. de Man, B. C. Jacobs, J. van Eijk, E. M. A. Aronica, D. Sprengers, H. Metselaar, C. de Zeeuw, H. Dalton, N. Kamar, M. Peppelenbosch and Q. Pan (2017). “Hepatitis E virus infects neurons and brains.” The Journal of Infectious Diseases 215 (8): 1197-1206. 
  39. Zhu, C., I. Chrifi, D. Mustafa, M. van der Weiden, P. Leenen, D. Duncker, J. Kros and C. Cheng (2017). “CECR1-mediated cross talk between macrophages and vascular mural cells promotes neovascularization in malignant glioma.” Oncogene: including Oncogene Reviews. 
  40. Zhu, C., J. Kros, M. van der Weiden, P. Zheng, C. Cheng and D. Mustafa (2017). “Expression site of P2RY12 in residential microglial cells in astrocytomas correlates with M1 and M2 marker expression and tumor grade.” Acta neuropathologica communications 5 (1). 
  41. Zhu, C., D. Mustafa, P. Zheng, M. van der Weiden, A. Sacchetti, M. Brandt, I. Chrifi, D. Tempel, P. Leenen, D. Duncker, C. Cheng and J. Kros (2017). “Activation of CECR1 in M2-like TAMs promotes paracrine stimulation-mediated glial tumor progression.” Neuro-Oncology.