Publications 2023

Publications in which OIC equipment was used

  1. Araújo-Gomes N, et al. (2023) Bioluminescence imaging on-chip platforms for non-invasive high-content bioimaging. Biosensors and Bioelectronics 237.
  2. Beekhof GC & Schonewille M (2023) Lobule-Related Action Potential Shape- and History-Dependent Current Integration in Purkinje Cells of Adult and Developing Mice. Cells 12(4).
  3. Birkisdóttir MB, et al. (2023) Purkinje-cell-specific DNA repair-deficient mice reveal that dietary restriction protects neurons by cell-intrinsic preservation of genomic health. Frontiers in Aging Neuroscience 14.
  4. Blažević A, et al. (2023) Proteomic analysis of small intestinal neuroendocrine tumors and mesenteric fibrosis. Endocrine-Related Cancer 30(6).
  5. Blot FGC, et al. (2023) Purkinje cell microzones mediate distinct kinematics of a single movement. Nature Communications 14(1).
  6. Bouwmeester MC, et al. (2023) Drug Metabolism of Hepatocyte-like Organoids and Their Applicability in In Vitro Toxicity Testing. Molecules 28(2).
  7. Broersen R, et al. (2023) Synaptic mechanisms for associative learning in the cerebellar nuclei. Nature Communications 14(1).
  8. Buijsen RAM, et al. (2023) Spinocerebellar Ataxia Type 1 Characteristics in Patient-Derived Fibroblast and iPSC-Derived Neuronal Cultures. Movement Disorders 38(8):1428-1442.
  9. Chen L, et al. (2023) A Single-Cell Taxonomy Predicts Inflammatory Niche Remodeling to Drive Tissue Failure and Outcome in Human AML. Blood cancer discovery 4(5):395-417.
  10. de Jong FC, et al. (2023) Non-muscle-invasive bladder cancer molecular subtypes predict differential response to intravesical Bacillus Calmette-Guérin. Science Translational Medicine 15(697).
  11. de Vries JJ, Laan DM, Frey F, Koenderink GH, & de Maat MPM (2023) A systematic review and comparison of automated tools for quantification of fibrous networks. Acta Biomaterialia 157:263-274.
  12. De Zeeuw CI, Koppen J, Bregman GG, Runge M, & Narain D (2023) Heterogeneous encoding of temporal stimuli in the cerebellar cortex. Nature Communications 14(1).
  13. Eenjes E, et al. (2023) Distinct roles for SOX2 and SOX21 in differentiation, distribution and maturation of pulmonary neuroendocrine cells. Cellular and Molecular Life Sciences 80(3).
  14. Falahati M, et al. (2023) Engineering of pulmonary surfactant corona on inhaled nanoparticles to operate in the lung system. Nano Today 52.
  15. Gaggioli V, et al. (2023) Dynamic de novo heterochromatin assembly and disassembly at replication forks ensures fork stability. Nature Cell Biology 25(7):1017-1032.
  16. Garmendia Urdalleta A, et al. (2023) The response of human macrophages to 3D printed titanium antibacterial implants does not affect the osteogenic differentiation of hMSCs. Frontiers in Bioengineering and Biotechnology 11.
  17. Giang J, et al. (2023) Hedgehog pathway mutations are involved in the pathogenesis of plaque-type “trichoblastoma”. A report of two cases 50(7):674-680.
  18. Gyenis A, et al. (2023) Genome-wide RNA polymerase stalling shapes the transcriptome during aging. Nature Genetics 55(2):268-279.
  19. Heemskerk T, van de Kamp G, Essers J, Kanaar R, & Paul MW (2023) Multi-scale cellular imaging of DNA double strand break repair. DNA Repair 131.
  20. Huang WQ, Burgers PC, Amin M, Luider TM, & ten Hagen TLM (2023) Precision Localization of Lipid-Based Nanoparticles by Dual-Fluorescent Labeling for Accurate and High-Resolution Imaging in Living Cells. Small Science 3(8).
  21. Iuliano A, et al. (2023) Real-time and Multichannel Measurement of Contractility of hiPSC-Derived 3D Skeletal Muscle using Fiber Optics-Based Sensing. Advanced Materials Technologies 8(22).
  22. Jansen I, et al. (2023) A tissue-engineered model of the atherosclerotic plaque cap. Toward understanding the role of microcalcifications in plaque rupture 7(3).
  23. Ji E, et al. (2023) In Vitro Mineralisation of Tissue-Engineered Cartilage Reduces Endothelial Cell Migration, Proliferation and Tube Formation. Cells 12(8).
  24. Komar ZM, van Gent DC, & Chakrabarty S (2023) Establishing a Microfluidic Tumor Slice Culture Platform to Study Drug Response. Current Protocols 3(3).
  25. Koornneef L, Paul MW, Houtsmuller AB, Baarends WM, & Slotman JA (2023) Three-color dSTORM Imaging and Analysis of Recombination Foci in Mouse Spread Meiotic Nuclei. Bio-Protocol 13(14).
  26. Koyunlar C, et al. (2023) Gata2-regulated Gfi1b expression controls endothelial programming during endothelial-to-hematopoietic transition. Blood advances 7(10):2082-2093.
  27. Krohn F, et al. (2023) The integrated brain network that controls respiration. eLife 12.
  28. Kuil LE, et al. (2023) Unbiased characterization of the larval zebrafish enteric nervous system at a single cell transcriptomic level. iScience 26(7).
  29. Li P, et al. (2023) Mpox virus infection and drug treatment modelled in human skin organoids. Nature Microbiology 8(11):2067-2079.
  30. Li S, et al. (2023) Glucocorticoid Receptor Antagonism Improves Glucose Metabolism in a Mouse Model of Polycystic Ovary Syndrome. Journal of the Endocrine Society 8(1).
  31. Li Y, et al. (2023) Seasonal coronavirus infections trigger NLRP3 inflammasome activation in macrophages but is therapeutically targetable. Antiviral Research 216.
  32. Llerena Schiffmacher D, et al. (2023) DDA1, a novel factor in transcription-coupled repair, modulates CRL4CSA dynamics at DNA damage-stalled RNA polymerase II. Research Square.
  33. Llerena Schiffmacher DA, et al. (2023) Live cell transcription-coupled nucleotide excision repair dynamics revisited. DNA Repair 130.
  34. Loyola S, et al. (2023) How inhibitory and excitatory inputs gate output of the inferior olive. eLife 12.
  35. Meng L, McLuskey A, Dunaif A, & Visser JA (2023) Functional analysis of rare anti-Müllerian hormone protein-altering variants identified in women with PCOS. Molecular Human Reproduction 29(5).
  36. Müller M, et al. (2023) Analysis of Nipah Virus Replication and Host Proteome Response Patterns in Differentiated Porcine Airway Epithelial Cells Cultured at the Air–Liquid Interface. Viruses 15(4).
  37. Niggl E, et al. (2023) HNRNPC haploinsufficiency affects alternative splicing of intellectual disability-associated genes and causes a neurodevelopmental disorder. American Journal of Human Genetics 110(8):1414-1435.
  38. Oyaga MR, Serra I, Kurup D, Koekkoek SKE, & Badura A (2023) Delay eyeblink conditioning performance and brain-wide c-Fos expression in male and female mice. Open Biology 13(5).
  39. Quint WH, et al. (2023) Post-GWAS screening of candidate genes for refractive error in mutant zebrafish models. Scientific Reports 13(1).
  40. Reuvers TGA, et al. (2023) DNA-PKcs inhibitors sensitize neuroendocrine tumor cells to peptide receptor radionuclide therapy in vitro and in vivo. Theranostics 13(10):3117-3130.
  41. Ruigrok TJH, Wang X, Sabel-Goedknegt E, Coulon P, & Gao Z (2023) A disynaptic basal ganglia connection to the inferior olive. potential for basal ganglia influence on cerebellar learning 17.
  42. Ruijmbeek CW, et al. (2023) Biallelic variants in FLII cause pediatric cardiomyopathy by disrupting cardiomyocyte cell adhesion and myofibril organization. JCI insight 8(17).
  43. Ruiz-Saenz A, et al. (2023) A reversible SRC-relayed COX2 inflammatory program drives resistance to BRAF and EGFR inhibition in BRAFV600E colorectal tumors. Nature Cancer 4(2):240-256.
  44. Sarink M, et al. (2023) Vermamoeba vermiformis resides in water-based heater-cooler units and can enhance Mycobacterium chimaera survival after chlorine exposure. Journal of Hospital Infection 132:73-77.
  45. Sharaf A, Frimat JP, Kremers GJ, & Accardo A (2023) Suppression of auto-fluorescence from high-resolution 3D polymeric architectures fabricated via two-photon polymerization for cell biology applications. Micro and Nano Engineering 19.
  46. Slijkhuis N, et al. (2023) Identifying lipid traces of atherogenic mechanisms in human carotid plaque. Atherosclerosis 385.
  47. Slyskova J, et al. (2023) Detection of oxaliplatin- and cisplatin-DNA lesions requires different global genome repair mechanisms that affect their clinical efficacy. NAR Cancer 5(4).
  48. Smits DJ, et al. (2023) CLEC16A interacts with retromer and TRIM27, and its loss impairs endosomal trafficking and neurodevelopment. Human Genetics 142(3):379-397.
  49. Smits DJ, et al. (2023) SMPD4 regulates mitotic nuclear envelope dynamics and its loss causes microcephaly and diabetes. Brain : a journal of neurology 146(8):3528-3541.
  50. Smits DJ, et al. (2023) De novo MCM6 variants in neurodevelopmental disorders. a recognizable phenotype related to zinc binding residues 142(7):949-964.
  51. Soloukey S, et al. (2023) Human brain mapping using co-registered fUS, fMRI and ESM during awake brain surgeries. A proof-of-concept study 283.
  52. Stabile R, et al. (2023) The deleted in oral cancer (DOC1 aka CDK2AP1) tumor suppressor gene is downregulated in oral squamous cell carcinoma by multiple microRNAs. Cell Death and Disease 14(5).
  53. Swinkels M, et al. (2023) Quantitative super-resolution imaging of platelet degranulation reveals differential release of von Willebrand factor and von Willebrand factor propeptide from alpha-granules. Journal of Thrombosis and Haemostasis 21(7):1967-1980.
  54. Theil AF, et al. (2023) Trichothiodystrophy-associated MPLKIP maintains DBR1 levels for proper lariat debranching and ectodermal differentiation. EMBO Molecular Medicine 15(11).
  55. van den Berg MM, Busscher E, Borst JGG, & Wong AB (2023) Neuronal responses in mouse inferior colliculus correlate with behavioral detection of amplitude-modulated sound. Journal of Neurophysiology 130(3):524-546.
  56. van der Woude M, Davo-Martinez C, Thijssen KL, Vermeulen W, & Lans H (2023) Recovery of protein synthesis to assay DNA repair activity in transcribed genes in living cells and tissues. Nucleic Acids Research 51(18):E93.
  57. Van Hemelryk A, et al. (2023) Viability Analysis and High-Content Live-Cell Imaging for Drug Testing in Prostate Cancer Xenograft-Derived Organoids. Cells 12(10).
  58. van Hijfte L, et al. (2023) Alternative normalization and analysis pipeline to address systematic bias in NanoString GeoMx Digital Spatial Profiling data. iScience 26(1).
  59. van Horik C, et al. (2023) Selection of potential targets for stratifying congenital pulmonary airway malformation patients with molecular imaging. is MUC1 the one? 32(170).
  60. van Staalduinen J, van Staveren T, Grosveld F, & Wendt KS (2023) Live-cell imaging of chromatin contacts opens a new window into chromatin dynamics. Epigenetics and Chromatin 16(1).
  61. van Tienderen GS, et al. (2023) Tumor decellularization reveals proteomic and mechanical characteristics of the extracellular matrix of primary liver cancer. Biomaterials Advances 146.
  62. van Tienderen GS, et al. (2023) Extracellular matrix drives tumor organoids toward desmoplastic matrix deposition and mesenchymal transition. Acta Biomaterialia 158:115-131.
  63. van Tienderen GS, et al. (2023) Modelling metastatic colonization of cholangiocarcinoma organoids in decellularized lung and lymph nodes. Frontiers in Oncology 12.
  64. Wang X, et al. (2023) Excitatory nucleo-olivary pathway shapes cerebellar outputs for motor control. Nature Neuroscience 26(8):1394-1406.
  65. Wang XT, et al. (2023) Camp−epac−pkcε−rim1α signaling regulates presynaptic long-term potentiation and motor learning. eLife 12.
  66. Wesdorp MA, et al. (2023) A culture model to analyze the acute biomaterial-dependent reaction of human primary neutrophils in vitro. Bioactive Materials 20:627-637.
  67. Windster JD, et al. (2023) A combinatorial panel for flow cytometry-based isolation of enteric nervous system cells from human intestine. EMBO Reports 24(4).
  68. Yavuz S, et al. (2023) Compartmentalization of androgen receptors at endogenous genes in living cells. Nucleic Acids Research 51(20):10992-11009.
  69. Zada A, et al. (2023) The long Filamin-A isoform is required for intestinal development and motility. implications for chronic intestinal pseudo-obstruction 32(1):151-160.
  70. Zhang S, van de Peppel J, Koedam M, van Leeuwen JPTM, & van der Eerden BCJ (2023) HSPB7 oppositely regulates human mesenchymal stromal cell-derived osteogenesis and adipogenesis. STEM CELL RESEARCH & THERAPY 14(1).
  71. Zhang S, van de Peppel J, Koedam M, van Leeuwen JPTM, & van der Eerden BCJ (2023) Tensin-3 is involved in osteogenic versus adipogenic fate of human bone marrow stromal cells. Cellular and Molecular Life Sciences 80(9).