Techno development

Publications of technology development in cooperation with the OIC 

  1. Geverts B, van Royen ME, Houtsmuller AB. Analysis of biomolecular dynamics by FRAP and computer simulation. Methods Mol Biol. 2015;1251:109-33 
  2. *Yoo HW, van Royen ME, van Cappellen WA, Houtsmuller AB, Verhaegen M, Schitter G. Automated spherical aberration correction in scanning confocal microscopy. RevSci Instrum. 2014 Dec;85(12):123706. 
  3. *Righolt CH, Slotman JA, Young IT, Mai S, van Vliet LJ, Stallinga S. Image filtering in structured illumination microscopy using the Lukosz bound. Opt Express. 2013 Oct 21;21(21):24431-51 
  4. van Royen ME, van de Wijngaart DJ, Cunha SM, Trapman J, Houtsmuller AB. A multi-parameter imaging assay identifies different stages of ligand-induced androgen receptor activation. Cytometry A. 2013 Sep;83(9):806-17 
  5. van de Corput MP, de Boer E, Knoch TA, van Cappellen WA, Quintanilla A, Ferrand L, Grosveld FG. Super-resolution imaging reveals three-dimensional folding dynamics of the β-globin locus upon gene activation. J Cell Sci. 2012 Oct 1;125(Pt 19):4630-9. 
  6. Boisset JC, Andrieu-Soler C, van Cappellen WA, Clapes T, Robin C. Ex vivo time-lapse confocal imaging of the mouse embryo aorta. Nat Protoc. 2011 Oct 27;6(11):1792-805. 
  7. Dzyubachyk O, Essers J, van Cappellen WA, Baldeyron C, Inagaki A, Niessen WJ, Meijering E. Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci. Bioinformatics. 2010 Oct 1;26(19):2424-30 
  8. Kaijzel EL, van Heijningen PM, Wielopolski PA, Vermeij M, Koning GA, van Cappellen WA, Que I, Chan A, Dijkstra J, Ramnath NW, Hawinkels LJ, Bernsen MR, Löwik CW, Essers J. Multimodality imaging reveals a gradual increase in matrix metalloproteinase activity at aneurysmal lesions in live fibulin-4 mice. Circ Cardiovasc Imaging. 2010 Sep;3(5):567-77. 
  9. Dzyubachyk O, van Cappellen WA, Essers J, Niessen WJ, Meijering E. Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans Med Imaging. 2010 Mar;29(3):852-67. 
  10. van Royen ME, Dinant C, Farla P, Trapman J, Houtsmuller AB. FRAP and FRET methods to study nuclear receptors in living cells. Methods Mol Biol. 2009;505:69-96. 
  11. Meijering E, Dzyubachyk O, Smal I, van Cappellen WA. Tracking in cell and developmental biology. Semin Cell Dev Biol. 2009 Oct;20(8):894-902 
  12. van Royen ME, Farla P, Mattern KA, Geverts B, Trapman J, Houtsmuller AB. Fluorescence recovery after photobleaching (FRAP) to study nuclear protein dynamics in living cells. Methods Mol Biol. 2009;464:363-85 
  13. Dinant C, van Royen ME, Vermeulen W, Houtsmuller AB. Fluorescence resonance energy transfer of GFP and YFP by spectral imaging and quantitative acceptor photobleaching. J Microsc. 2008 Jul;231(Pt 1):97-104. 
  14. Smal I, Meijering E, Draegestein K, Galjart N, Grigoriev I, Akhmanova A, van Royen ME, Houtsmuller AB, Niessen W. Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. Med Image Anal. 2008 Dec;12(6):764-77. 
  15. van Royen ME, Cunha SM, Brink MC, Mattern KA, Nigg AL, Dubbink HJ, Verschure PJ, Trapman J, Houtsmuller AB. Compartmentalization of androgen receptor protein-protein interactions in living cells. J Cell Biol. 2007 Apr 9;177(1):63-72. 
  16. *Politi A, Moné MJ, Houtsmuller AB, Hoogstraten D, Vermeulen W, Heinrich R, van Driel R. Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies. Mol Cell. 2005 Sep 2;19(5):679-90. 
  17. Houtsmuller AB. Fluorescence recovery after photobleaching: application to nuclear proteins. Adv Biochem Eng Biotechnol. 2005;95:177-99. 
  18. Houtsmuller AB, Vermeulen W. Macromolecular dynamics in living cell nuclei revealed by fluorescence redistribution after photobleaching. Histochem Cell Biol. 2001 Jan;115(1):13-21. 
  19. Dinant C, de Jager M, Essers J, van Cappellen WA, Kanaar R, Houtsmuller AB, Vermeulen W (2007). Activation of multiple DNA repair pathways by sub-nuclear damage induction methods. J Cell Sci 120:2731-40